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DICOM PS3.16 2020a - Content Mapping Resource​

Page 1491​

Coding​

Code​

Code Meaning​ Body Part Examined​SNOMED-RT​FMA​ Mouse​NCIt ID​Uberon​ UMLS​

Scheme​

Value​

ID (Retired)​ ID​ Anatomy​

ID​ Concept​

Designator​

 

ID​

UniqueID​

SCT​

39607008​Lung​

LUNG​

SCT​

91609006​Mandible​

JAW​

SCT​

70925003​Maxilla​

MAXILLA​

SCT​

30518006​Navicular of forefoot​FORENAVICULAR​

SCT​

45048000​Neck​

NECK​

SCT​

363654007​Orbital structure​

ORBIT​

SCT​

15497006​Ovary​

OVARY​

SCT​

15776009​Pancreas​

PANCREAS​

SCT​

45289007​Parotid gland​

PAROTID​

SCT​

64234005​Patella​

PATELLA​

SCT​

12921003​Pelvis​

PELVIS​

SCT​

18911002​Penis​

PENIS​

SCT​

54066008​Pharynx​

PHARYNX​

SCT​

62413002​Radius​

RADIUS​

SCT​

34402009​Rectum​

RECTUM​

SCT​

113197003​Rib​

RIB​

SCT​

79601000​Scapula​

SCAPULA​

SCT​

18619003​Sclera​

SCLERA​

SCT​

20233005​Scrotum​

SCROTUM​

SCT​

16982005​Shoulder​

SHOULDER​

SCT​

89546000​Skull​

SKULL​

SCT​

78961009​Spleen​

SPLEEN​

SCT​

56873002​Sternum​

STERNUM​

SCT​

53620006​Temporomandibular​TMJ​

 

joint​

 

SCT​

40689003​Testis​

TESTIS​

SCT​

68367000​Thigh​

THIGH​

SCT​

76505004​Thumb​

THUMB​

SCT​

9875009​Thymus​

THYMUS​

SCT​

69748006​Thyroid​

THYROID​

SCT​

12611008​Tibia​

TIBIA​

SCT​

29707007​Toe​

TOE​

SCT​

21974007​Tongue​

TONGUE​

SCT​

23416004​Ulna​

ULNA​

SCT​

40983000​Upper arm​

ARM​

SCT​

87953007​Ureter​

URETER​

SCT​

13648007​Urethra​

URETHRA​

SCT​

35039007​Uterus​

UTERUS​

SCT​

76784001​Vagina​

VAGINA​

SCT​

45292006​Vulva​

VULVA​

T-28000​ 7195​0000415​C12468​0002048​C0024109​ T-11180​ 52748​0001487​C12290​0001684​C0024687​ T-11170​ 9711​0001491​C26470​0002397​C0024947​ T-12450​ 33311​0002555​C12854​0001427​C0223724​ T-D1600​ 7155​0000024​C13063​0000974​C0027530​ T-D14AE​53074​0002482​C12347​0001697​C0029180​ T-87000​ 7209​0000384​C12404​0000992​C0029939​ T-65000​ 7198​0000120​C12393​0001264​C0030274​ T-61100​ 59790​0001585​C12427​0001831​C0030580​ T-12730​ 24485​0001374​C33282​0002446​C0030647​ T-D6000​ 9578​0000030​C12767​0002355​C0030797​ T-91000​ 9707​0000408​C12409​0000989​C0030851​ T-55000​ 46688​0000432​C12425​0001042​C0031354​ T-12420​ 23463​0001357​C12777​0001423​C0034627​ T-59600​ 14544​0000336​C12390​0001052​C0034896​ T-11300​ 7574​0000315​C12782​0002228​C0035561​ T-12280​ 13394​0001330​C12783​0006849​C0036277​ T-AA110​58269​0000280​C12784​0001773​C0036410​ T-98000​ 18252​0000409​C12785​0001300​C0036471​ T-D2220​25202​0000038​C25203​0001467​C0037004​ T-11100​ 46565​0000316​C12789​0003128​C0037303​ T-C3000​ 7196​0000141​C12432​0002106​C0037993​ T-11210​ 7485​0001331​C12793​0000975​C0038293​ T-15290​ 54832​0002899​C32888​0003700​C0039493​

T-94000​ 7210​0000411​C12412​0000473​C0039597​ T-D9100​24967​0000052​C33763​0000376​C0039866​ T-D8810​24938​0000454​C52834​0001463​C0040067​ T-C8000​ 9607​0000142​C12433​0002370​C0040113​ T-B6000​ 9603​0000129​C12400​0002046​C0040132​ T-12740​ 24476​0001361​C12800​0000979​C0040184​ T-D9800​25046​0000048​C33788​0001466​C0040357​ T-53000​ 54640​0000347​C12422​0001723​C0040408​ T-12430​ 23466​0001358​C12809​0001424​C0041600​ T-D8200​24890​0000033​C32141​0001460​C0446516​ T-73000​ 9704​0000378​C12416​0000056​C0041951​ T-75000​ 19667​0000379​C12417​0000057​C0041967​ T-83000​ 17558​0000389​C12405​0000995​C0042149​ T-82000​ 19949​0000394​C12407​0000996​C0042232​ T-81000​ 20462​0000395​C12408​0000997​C0042993​

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Page 1492​

DICOM PS3.16 2020a - Content Mapping Resource​

Note​

Since the Adult Mouse Anatomy Ontology is not in the UMLS, the mapping of Mouse Anatomy codes described here is an​ extract of a mapping to the NCI Thesaurus described in Hayamizu TF, de Coronado S, Fragoso G, Sioutos N, Kadin JA,​ Ringwald M. The mouse-human anatomy ontology mapping project. Database: The Journal of Biological Databases and​ Curation 2012;2012:bar066. doi:10.1093/database/bar066. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308156/. The​ mapping files used can be found at ftp://ftp.informatics.jax.org/pub/reports/ma2ncit.obo.​

The NCI Thesaurus codes were then used to look up corresponding concepts in UMLS, from which SNOMED and FMA​ codes were extracted automatically (and various conflicts and ambiguities resolved manually). The same correspondence​ to existing Body Part Examined values is used as in other tables in this Annex.​

Another mapping project using the FMA as a reference ontology was not used, since the files were not available. See Zhang​ S, Bodenreider O. Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Ref-​ erence.AMIAAnnualSymposiumProceedings2005;2005:864-868http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560629/.​

Table L-4. Correspondence between Animal-specific and Generic NCI Thesaurus Codes​

Code Meaning​

Generic NCIt ID​

Generic UMLS​

Mouse-specific​Mouse-specific​Rat-specific​Rat-specific​

 

 

Concept UniqueID​

NCIt ID​

UMLS Concept​

NCIt ID​

UMLS​

 

 

 

 

UniqueID​

 

Concept​

 

 

 

 

 

 

UniqueID​

Adrenal gland​

C12666​

C0001625​

C22635​

C1515888​

C60540​

C1882555​

Ankle joint​

C32078​

C0003087​

 

 

 

 

Aorta​

C12669​

C0003483​

C23600​

 

C60541​

C1882561​

Bladder​

C12414​

C0005682​

C22729​

C1511191​

C60634​

C1882899​

Brain​

C12439​

C0006104​

C22606​

C1521713​

C60544​

C1882598​

Breast​

C12367​

C0929301​

C22549​

C1512980​

C60585​

C1882771​

Bronchus​

C12683​

C0006255​

C24050​

C1518036​

C60546​

C1882603​

Buccalregionofface​

C13070​

C0007966​

C23972​

 

 

 

Calcaneus​

C32250​

C0006655​

 

 

 

 

Carotid Artery​

C12687​

C0007272​

C23618​

 

 

 

Cerebellum​

C12445​

C0007765​

C22609​

C1522278​

C60550​

C1882617​

Cervix​

C12311​

C0007874​

 

 

C60635​

C1882903​

Clavicle​

C12695​

C0008913​

C23626​

 

 

 

Coccyx​

C12696​

C0009194​

 

 

 

 

Colon​

C12382​

C0009368​

C22528​

C1522281​

C60554​

C1882628​

Cornea​

C12342​

C0010031​

C22717​

C2700413​

 

 

Coronary artery​

C12843​

C0205042​

C23773​

 

 

 

Digit​

C40186​

C0582802​

 

 

 

 

Duodenum​

C12263​

C0013303​

C22523​

C1522711​

C60558​

C1882648​

Elbow joint​

C32497​

C0013770​

 

 

 

 

Esophagus​

C12389​

C0014876​

C22509​

C1516967​

C60563​

C1882662​

Extremity​

C12429​

C0015385​

C23363​

 

 

 

Eye​

C12401​

C0015392​

C22711​

C1517081​

C60565​

C1882665​

Eyelid​

C12713​

C0015426​

C23644​

 

C60566​

C1882666​

Face​

C13071​

C0015450​

C23973​

 

 

 

Femur​

C12717​

C0015811​

C23648​

 

C60567​

C1882669​

Fibula​

C12718​

C0016068​

C23649​

 

 

 

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DICOM PS3.16 2020a - Content Mapping Resource​

 

Page 1493​

Code Meaning​

Generic NCIt ID​

Generic UMLS​

Mouse-specific​Mouse-specific​Rat-specific​Rat-specific​

 

 

Concept UniqueID​

NCIt ID​

UMLS Concept​

NCIt ID​

UMLS​

 

 

 

 

UniqueID​

 

Concept​

 

 

 

 

 

 

UniqueID​

Finger​

C32608​

C0016129​

 

 

 

 

Foot​

C32622​

C0016504​

 

 

 

 

Frontal sinus​

C12277​

C0016734​

C23210​

 

 

 

Gallbladder​

C12377​

C0016976​

C23312​

 

 

 

Hand​

C32712​

C0018563​

 

 

 

 

Head​

C12419​

C0018670​

C23353​

 

 

 

Head and Neck​

C12418​

C0460004​

C23352​

 

 

 

Heart​

C12727​

C0018787​

C22498​

C1512359​

C60571​

C1882687​

Hip joint​

C32742​

C0019558​

 

 

 

 

Humerus​

C12731​

C0020164​

C23662​

 

 

 

Ileum​

C12387​

C0020885​

C22525​

C1522516​

C60573​

C1882700​

Ilium​

C32765​

C0020889​

 

 

 

 

Jaw region​

C48821​

C0022359​

C22683​

C1511239​

 

 

Jejunum​

C12388​

C0022378​

C22524​

C1522714​

C60575​

C1882710​

Kidney​

C12415​

C0022646​

C22730​

C1517673​

C60577​

C1882714​

Liver​

C12392​

C0023884​

C22515​

C1517914​

C60581​

C1882726​

Lower leg​

C32974​

C1140621​

 

 

 

 

Lung​

C12468​

C0024109​

C22600​

C1518039​

C60582​

C1882727​

Mandible​

C12290​

C0024687​

C23223​

 

 

 

Maxilla​

C26470​

C0024947​

 

 

 

 

Navicular of forefoot​

C12854​

C0223724​

 

 

 

 

Neck​

C13063​

C0027530​

C23965​

 

 

 

Orbital structure​

C12347​

C0029180​

C23282​

 

C60594​

C1882803​

Ovary​

C12404​

C0029939​

C22656​

C1518753​

C60595​

C1882808​

Pancreas​

C12393​

C0030274​

C24044​

C1518865​

C60597​

C1882810​

Parotid gland​

C12427​

C0030580​

C22504​

C1527051​

C60600​

C1882814​

Patella​

C33282​

C0030647​

 

 

 

 

Pelvis​

C12767​

C0030797​

C23698​

 

 

 

Penis​

C12409​

C0030851​

C22172​

C1518951​

 

 

Pharynx​

C12425​

C0031354​

C22507​

C1519041​

 

 

Radius​

C12777​

C0034627​

C23708​

 

 

 

Rectum​

C12390​

C0034896​

C22532​

C1522513​

C60609​

C1882833​

Rib​

C12782​

C0035561​

C23713​

 

 

 

Scapula​

C12783​

C0036277​

C23714​

 

 

 

Sclera​

C12784​

C0036410​

C23715​

 

 

 

Scrotum​

C12785​

C0036471​

C22176​

C1519206​

 

 

Shoulder​

C25203​

C0037004​

 

 

 

 

Skull​

C12789​

C0037303​

C22684​

C1522418​

 

 

Spleen​

C12432​

C0037993​

C22556​

C1519474​

C60621​

C1882867​

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Page 1494​

DICOM PS3.16 2020a - Content Mapping Resource​

 

 

Code Meaning​

Generic NCIt ID​

Generic UMLS​

Mouse-specific​Mouse-specific​Rat-specific​Rat-specific​

 

 

Concept UniqueID​

NCIt ID​

UMLS Concept​

NCIt ID​

UMLS​

 

 

 

 

UniqueID​

 

Concept​

 

 

 

 

 

 

UniqueID​

Sternum​

C12793​

C0038293​

C23724​

 

C60622​

C1882873​

Temporomandibular​

C32888​

C0039493​

 

 

 

 

joint​

 

 

 

 

 

 

Testis​

C12412​

C0039597​

C22178​

C1515315​

C60625​

C1882878​

Thigh​

C33763​

C0039866​

 

 

 

 

Thumb​

C52834​

C0040067​

 

 

 

 

Thymus​

C12433​

C0040113​

C22553​

C1515438​

C60627​

C1882880​

Thyroid​

C12400​

C0040132​

C22650​

C1522142​

C60628​

C1882881​

Tibia​

C12800​

C0040184​

C23731​

 

 

 

Toe​

C33788​

C0040357​

 

 

 

 

Tongue​

C12422​

C0040408​

C22508​

C1519545​

C60629​

C1882882​

Ulna​

C12809​

C0041600​

C23740​

 

 

 

Upper arm​

C32141​

C0446516​

 

 

 

 

Ureter​

C12416​

C0041951​

C22738​

C1519822​

C60632​

C1882897​

Urethra​

C12417​

C0041967​

C22739​

C1519824​

C60633​

C1882898​

Uterus​

C12405​

C0042149​

C22671​

C1519876​

C60636​

C1882904​

Vagina​

C12407​

C0042232​

C22676​

C1519910​

C60637​

C1882906​

Vulva​

C12408​

C0042993​

C22677​

C1520067​

 

 

Note​

For the mouse, NCIt contains some duplicate anatomical concepts, including those which have been marked inactive and​ appear to have been replaced with improved codes for the "Mouse Models of Human Cancers Consortium" (MMHCC).​ Whenever duplicates were found, the MMHCC concept has been used in this table.​

This table was produced by searching NCIt for all concepts that had "mouse" or "rat" in their concept name or synonyms,​ and then using that synonym with the word "mouse" or "rat" removed, to match against generic concept names.​

The NCI Thesaurus codes were then used to look up corresponding concepts in UMLS, though not all of the concepts are​ included in UMLS yet (especially the MMHCC concepts).​

Table L-5. Pairedness of Anatomic Concepts​

SNOMED Code Value​

Code Meaning​

Paired Structure​

77012006​

Amniotic fluid​

N​

113345001​

Abdomen​

N​

416949008​

Abdomen and Pelvis​

N​

7832008​

Abdominal aorta​

N​

85856004​

Acromioclavicular joint​

Y​

23451007​

Adrenal gland​

Y​

70258002​

Ankle joint​

Y​

128585006​

Anomalous pulmonary vein​

N​

128553008​

Antecubital vein​

Y​

194996006​

Anterior cardiac vein​

N​

- Standard -​

 

DICOM PS3.16 2020a - Content Mapping Resource​

Page 1495​

SNOMED Code Value​

Code Meaning​

Paired Structure​

60176003​

Anterior cerebral artery​

Y​

8012006​

Anterior communicating artery​

N​

17388009​

Anterior spinal artery​

N​

68053000​

Anterior tibial artery​

Y​

110612005​

Anus, rectum and sigmoid colon​

N​

15825003​

Aorta​

N​

57034009​

Aortic arch​

N​

128551005​

Aortic fistula​

N​

128564006​

Apex of left ventricle​

N​

86598002​

Apex of Lung​

Y​

128565007​

Apex of right ventricle​

N​

66754008​

Appendix​

N​

51114001​

Artery​

Y​

54247002​

Ascending aorta​

N​

9040008​

Ascending colon​

N​

59652004​

Atrium​

Y​

91470000​

Axilla​

Y​

67937003​

Axillary Artery​

Y​

68705008​

Axillary vein​

Y​

72107004​

Azygos vein​

N​

77568009​

Back​

N​

128981007​

Baffle​

N​

59011009​

Basilar artery​

N​

28273000​

Bile duct​

N​

89837001​

Bladder​

N​

110837003​

Bladder and urethra​

N​

91830000​

Body conduit​

N​

128548003​

Boyd's perforating vein​

Y​

17137000​

Brachial artery​

Y​

20115005​

Brachial vein​

Y​

12738006​

Brain​

N​

76752008​

Breast​

Y​

34411009​

Broad ligament​

N​

955009​

Bronchus​

Y​

60819002​

Buccal region of face​

N​

46862004​

Buttock​

Y​

80144004​

Calcaneus​

Y​

53840002​

Calf of leg​

Y​

2334006​

Calyx​

N​

69105007​

Carotid Artery​

Y​

21479005​

Carotid Bulb​

Y​

57850000​

Celiac artery​

N​

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